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HOW TO START WITH LABCOLLECTOR
- How does LabCollector interface look?
- How does a module generally look like?
- How to set up storage in LabCollector?
- What are fields in LabCollector?
- What are records in LabCollector & how to create them?
- How to start with Antibodies module?
- How to start with Chemical structures module?
- How to start with Document module?
- How to start with Electronic Lab Notebook (ELN)?
- How to start with Equipment module?
- How to start with Plasmids module?
- How to start with Primers module?
- How to start with Reagent & Supplies module?
- How to start with Sample module?
- How to start with Sequences module?
- How to start with Strains & Cells module?
- How to use Webinars add-on?
- How to mass update memorized records?
- How to use LabCollector for COVID-19 testing?
- Show all articles ( 4 ) Collapse Articles
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INSTALLATION
- How can I connect to LabCollector from another computer?
- LabCollector Installation Requirements for AWS
- How to install LabCollector using Docker?
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- How to move a whole installation to a new Windows server?
- How to run LabCollector server on a 64bits Windows machine?
- Install LabCollector with IIS on Windows Server
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- Clean the apache log manually to improve the speed.
- Switching to the ServerManager v2.5 (old way)
- Windows Installation Using Setup Wizard
- How to enable the soap.dll extension in LSMRemote using php file or LabCollector Server Manager (Windows)?
- How to use the LabCollector Server Manager?
- How to replicate LabCollector in real time with Windows Server Manager?
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- Apache Server/Web server doesn't run on Windows 10
- Clean the apache log manually to improve the speed.
- Clean the logs manually to improve the speed.
- ERROR in log: AH00052: child pid 3461 exit signal Segmentation fault (11)
- ERROR: Warning: mysql_connect(): Client does not support authentication protocol requested by server (…)
- How to make Java applets work again after upgrading to Java 7U51+?
- How to restore overwritten documents
- I have the message "Failed to connect to mySQL server. No Database found for this lab account". What can I do?
- My LabCollector or Add-on is very slow. Why and how to fix it?
- Unknown column “auto_name_mode” in “field list”: The error is occurring when I want to adjust existing records, make new records or import data. What can I do?
- URL issue
- When I add records or any values I have this message: "incorrect integer value: for column 'count' at row 1"
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- Give access to LabCollector to collaborators outside your network
- Can the database be separated from the system on which labcollector is installed?
- I have problems installing PHP and/or MySQL. Is there an alternative?
- Mysql Server memory usage optimization
- PHP extensions needed
- Rack scanners installation and connection with ScanServer
- System Requirements - Hosted options (FR/ENG)
- What are PHP and MySQL? Do I need to have PHP & MySQL?
- How to migrate LabCollector to new Linux Server?
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GENERAL
- What is LabCollector?
- How do I install LabCollector? Where can I find the install.exe file?
- System Requirements - Hosted options (FR/ENG)
- How does the remotely hosted version work?
- Can I use LabCollector on a single computer? Can I install it on a web server?
- If I purchase ONE license, do I need to purchase additional licenses for other computers in my lab network?
- Client Area Tutorial
- LabCollector support
- What are the FDA requirements for software to comply with GxP guidelines?
- Do I need to purchase all modules? Can I use only the primers module?
- Icons meaning (EN/FR) V.6.0
- Icons meaning (EN/FR)
- How do I search in LabCollector?
- Can I see/list all records in a module?
- How do I print records?
- How to add panels to LabColletor v6.0?
- How to create tubes with storage and mark their usage? (v6.0)
- How to create and set alerts for tubes? (v6.0)
- Label network printers and roll types
- Show all articles ( 4 ) Collapse Articles
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BASIC FEATURES
- Export and print models
- How do I add multiple records without data import
- How do I link records and for what purpose?
- How do you create or edit records? (FR/EN)
- Icons meaning (EN/FR)
- Icons meaning (EN/FR) V.6.0
- Reagents & Supplies Link what is the purpose?
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- What can I do with the default fields?
- Can I add a custom module to fit my specific needs?
- Custom field types
- How do you create a custom field? (For v5.2 and below)
- How do you create a custom field? For version 5.2 onwards
- Custom field: Field category option version 5.2x
- Custom fields: Tab Analysis option
- How do I customize record options?
- How do I use a Read-only field?
- How to customize LabCollector login page colors?
- How to change the language & name of custom fields?
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- What is a CSV file?
- Import your data (v6.0)
- Import your data (5.3 version and above)
- How to delimit data csv for data import?
- What are the default fields values while importing data? v6.0
- How do I format the date value as yyyy-mm-dd or yy-mm-dd to import?
- Import your samples and associated storage in 3 steps
- Import and manage your Reagent & Supplies V5.3 and above
- Importer ma BDD EndNote dans LabCollector (FR)
- How to solve errors while importing data
- How to mass update memorized records?
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- What are user level permissions?
- How do you use versioning? v5.31 and below
- How do you use versioning? v5.4 and above
- How to manage users (v5.31 and below)
- How to manage users (v5.4 and above)
- How to use AD or LDAP for login authentication?
- What are group policies and how to use them?
- What are group policies and how to use them? v5.4 and above
- What are group policies and how to use them? v6.0 and above
- How to manage users? (v.6.032+)
- How to configure access permissions?
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MODULES
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- Articles coming soon
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- How to start with Reagent & Supplies module?
- Reagent & supplies preferences (v6.03)
- Reagent & supplies preferences
- How do I create alerts for chemical and equipment?
- How do I create alerts with lots? (v6.0)
- Manage your reagent lots (v6.0)
- Manage your reagent lots
- How to dispose of a lot?
- Risk codes
- How do I manage vendors and sellers?
- How do I print risk and safety data information?
- Import and manage your Reagent & Supplies V5.3 and above
- Manage storage for Reagent & Supplies module
- Manage storage for Reagent & Supplies module (v6.0)
- GHS Hazard Pictograms, Mandatory Safety Signs and the NFPA Hazard Rating System
- How to Use SDS Maker?
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- Articles coming soon
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- Articles coming soon
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- How do I create alerts for chemical and equipment?
- How to activate and set different types of Equipment alerts? (v6.0)
- How to activate and set different types of Equipment alerts? (v5.4 and below)
- How to add a new category and record in equipment module? (v6.0)
- How to add a new category and record in equipment module? (v5.4 and below)
- How to add control chart for calibration maintenance of equipment?
- How to Add/Edit Maintenance for Equipment? (v6.0+)
- How to add/edit maintenance for equipment (v5.4 and below)
- How to export equipment maintenance report?
- What are the options in "display maintenance" section of equipment. (v5.4 and below)
- What are the options in "display maintenance" section of equipment. (v6.0)
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- Articles coming soon
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ADD-ONS
- What are Add-ons?
- Fly Stock Manager
- What's Weight Tracker Add-On? How To Use It?
- Custom Field File Upload
- What is e-catalog add-on? And how to use it?
- Lab Cross Search
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- How to start with LSM?
- LSM Usage Guide – From Job Request to Results Reporting
- Test the LSM API
- Insert the LSMremote application in your website
- How to Perform a Paternity/Relationship Genetic Test using LSM?
- Introduction to HL7 and how to use it in LSM
- LSM Job List Icons - What do they mean?
- LSM: How to Group Test Results by Specialty?
- Lot-Sample Linking in LSM for Quality Control
- LSM: Trending and Job Charts
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- 1st step: Create users and requesters
- How to send samples from LabCollector to a LSM job
- How to link a custom module to LSM?
- How to manage case records (patients, animals...) in LSM?
- How to re-order/re-arrange job & sample custom fields in LSM?
- How to manage ranges in LSM?
- How to restart a job in LSM?
- I’m able to add a new job with no problems but when I try to start it I can’t do it. The following error appears: Error loading XML document: data/bl/bl-job.php. What’s the problem?
- How to accept jobs in LSM?
- How to create & execute a job in LSM?
- How to create version of test in LSM?
- How to import CSV with samples and tests in LSM?
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- 5th step: Result and invoice template
- How to generate Reports in LSM?
- How to create a processing report in LSM?
- How to Generate Invoices Report Template in LSM?
- How to create a Chain Of Custody (CoC) report and use it LSM & LSMRemote?
- How to use text editor to create a report template in LSM?
- Report tags in LSM for result/invoice/CoC/batch templates?
- Correction/Amendement actions in LSM report
- How to print and follow multiple reports/CoC's in LSMRemote?
- Error loading big reports in LabCollector
- Error loading big reports in LSM
- How to configure header & footer in LSM report/CoC/invoices? (from v4.057+)
- What's the purpose of the report unique ID barcode?
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- LSMRemote (v6.0) registration, login and other options
- LSMRemote installation steps & Integration into the website ? (v4.0)
- LSMRemote configurable options (v4.0)
- How to configure new fields, submit a job in LSMRemote & view it in LSM?
- How to search in LSMRemote?
- How to create a token for report access for patient/client using LSMRemote?
- How to generate CoC Manifest with integrated labels?
- How to print and follow multiple reports/CoC's in LSMRemote?
- Patient pre-registration configuration and LSMRemote portal connection
- How to do job pre-registration from the LSMRemote portal?
- How to integrate appointments scheduling in LSMRemote?
- How to enable the soap.dll extension in LSMRemote using php file or LabCollector Server Manager (Windows)?
- How to import jobs using LSMRemote?
- How to configure kit and activate it in LSMRemote?
- How to print in bulk the barcodes using LSMRemote?
- How to enable the soap.dll extension in LSMRemote using php file on Linux?
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- OW-Server ENET manual
- OW-Server Quick start guide
- OW-Server WiFi manual
- Quick WiFi configuration for OW-Server WiFi
- Conversion method from mA reads to specific Unit for data logger probe?
- How to setup your Data Logger in LabCollector?
- How to Install Sensors on ULT Freezers?
- How to Setup Alerts in Data Logger?
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- How to create a Book, add an Experiment and a Page?
- What is inside a Book?
- What is inside an Experiment?
- Whats inside ELN Page?
- How do I print from ELN?
- ELN Workflows
- ELN templates
- TIFF Image usage
- How to electronically sign the ELN pages?
- How to add a microplate in ELN Page?
- How to add a reagents/solutions recipe in ELN?
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- ELN - Zoho Spreadsheet Help Guide
- Graph in Flat spreadsheet
- How to change the language of ZOHO excel in ELN?
- How to replicate/import your excel in ELN?
- How to use spreadsheets?
- What is Flat & Zoho Spreadsheet Editor & how to enable it?
- How to use Flat spreadsheet & formulas in it?
- How to make graph in Flat Spreadsheet?
- What can be copy pasted from excel into Flat spreadsheet?
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- Sample-receiving add-on : Project configuration settings
- How to create & process a package in Sample receiving add-on?
- How to perform pooling in sample receiving add on?
- How to process plates in sample receiving add-on?
- How to view samples created in sample receiving add-on into a module?
- How to add samples created in sample receiving into Workflow add-on?
- How to connect and send samples from 'sample receiving' to do tests in 'LSM'?
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MOBILE APPS
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- Articles coming soon
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INTEGRATION
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API
- Introduction to LabCollector API
- API for LabCollector (v5.4+)
- API for LSM (v2)
- API for ELN (v1)
- How to test the LabCollector REST API?
- API error messages
- API: How to create boxes or plates?
- Test the Lab Service Manager API
- Webservice/API Apache setup
- How to set up your Web Services API?
- What's Swagger UI? How to access it & test out API endpoints?
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TOOLS
- How do you install NCBI blast executable to use in LabCollector?
- How to setup and use Recipe Manager (old version)
- How to manage memorized items?
- Purchase order management - A to Z
- Purchase order management – A to Z (v 6.0+)
- Recipe Manager (v6.0)
- Samples batch tool (Rack scanner)
- How to use Mass Record Updater?
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UTILITIES / MIDDLEWARE
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- How to download and Install File connector v2.2? (Labcollector v6.0 )
- How to install Fileconnector in Mac OS? (Labcollector v6.0 )
- Editing a file using File Connector
- How to use a specific software to open certain types of files in fileconnector? (Labcollector v6.0 )
- How to use Fileconnector in Mac OS?
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- How to setup and configure Scan Server with LabCollector?
- Samples batch tool (Rack scanner)
- The rack barcode on top or as third element in lines?
- How to open CSV in UTF8 in Excel?
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PRINTING
- How to configure printer with LabCollector?
- How to connect USB printer to LabCollector?
- Direct Printing Compatibility (All Printers Support Generic PDF Label Printing)
- Label network printers and roll types
- Barcode label generation and printing
- How do I print barcode labels?
- How do I print box maps?
- How do I print records?
- How do I print risk and safety data information?
- How do I print storage records
- How to print labels on HTTPS environment?
- How to best configure your PDA N5000 for LabCollector use
- How can I configure my barcode scanner AGB-SC1 CCD?
- How can I configure my barcode scanner HR200C ?
- How do I configure FluidX to support ScanServer?
- Barcode Printer Connection Time Out
- AGB-W8X Manual for barcode scanning
- How to set up your Printers & Labels?
- How to Increase Label Print Quality in LabCollector?
- Show all articles ( 4 ) Collapse Articles
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STORAGE
- How to set up storage in LabCollector?
- How to create boxes/drawers/racks in storage equipment?
- How to create box models for storage?
- How to replicate and duplicate boxes in storage?
- How to store and manage straws? (EN/FR)
- How Do I Add Samples to a Specific Freezer, Shelf or Other Part of the Storage System?
- How do I get out samples from a specific freezer?
- Manage storage for Reagent & Supplies module
- How to organize Storage Browser?
- How do I print box maps?
- How do I print storage records
- Storage Check-in/out System
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COMPLIANCY
- What is in the Compliancy Pack?
- How do I use a Read-only field?
- What are the FDA requirements for software to comply with GxP guidelines?
- FDA CFR21 part 11 product checklist
- ISO 17025 compliancy requirements
- How do you use versioning? v5.31 and below
- How do you use versioning? v5.4 and above
- Should I lock, archive or delete records?
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SUPPORT
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SETTINGS
- How to configure Apache to work with Office 2007 and higher?
- How to speed up your LabCollector? (EN/FR)
- PHP extensions needed
- Speed your local network
- TIFF Image usage
- Time stamp in the records showing incorrect time.
- How to configure SMTP to use OAuth 2.0 (Microsoft & Gmail)?
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- LabCollector General setup
- LabCollector General setup - v5.4
- LabCollector General Setup 5.2
- LabCollector General setup-v6.0
- Login Options & php requirements for LDAP/SSO
- How to set up your LabCollector's general settings, logo & modules' names?
- How to configure your Proxy, Task Scheduler and Email options?
- How to configure your module search & form options?
- How to configure your Homepage external links?
- How to set up your News Feed?
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- Error loading big reports in LabCollector
- Fields with scroll bar don't work with Safari, what can I do?
- I can't manage to view box scheme in Safari, why?
- I get the error: "The program can't start because MSVCR110.dll is missing from your computer. Try reinstalling the program to fix this problem" when installing or updating LabCollector for Windows
- Issue in upload file: look at your PHP configuration
- Module search fails with 404 error or request too long
- When I want to import large files, nothing happens?
- Why do I have the error “MySQL server has gone away” on file upload?
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NEW KB OF THE MONTH
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RECORDED PRESENTATIONS
LSMRemote installation steps & Integration into the website ? (v4.0)
SUMMARY:
For test labs that receive a request to perform tests (jobs) on a sample from a requester (clinic, hospital, etc), our Lab Service Management (LSM) add-on is the best option. However, to make the process easier we offer our utility LSMRemote which helps both you and the requester. LSMRemote application can be integrated into the website of the requester (clinic, hospital, etc).
LSMremote is an easy web/mobile interface of your Lab Service Manager for your client accessible through your own URL.
This makes it easier for the requester to send and view job requests, results, and reports.
Follow the steps below to install LSMRemote:-
1. Download & install LSMRemote
- Renaming the config_install.ini file
- Updating the wsurl option in config.ini
- Enabling the extension in php.ini file
2. Integrate LSMRemote into your website
3. Activating report access portal
4. LSMRemote configurable properties
1. Download & install LSMRemote
- To install LSM remote, you can do it directly from your Client Area.
- Once you are in the Client Area, go to DOWNLOADS -> SELECT YOUR LABCOLLECTOR VERSION -> LSMREMOTE
* Take care to download the LSMRemote according to your LabCollector version.
- When you click on the download button, a zip file will be downloaded.
- Extract the zip files contents into the LabCollector installation folder in extra modules.
(For windows go to OS (C:)->Program Files (x86) ->AgileBio ->LabCollector -> www->your online instance name will be seen on a folder (click on that folder) ->extra_modules (however as LSMRemote can be integrated in you hosting websites you can go to your preferred web hosting provider) - After this, you need to follow 3 steps, before trying to open the LSMremote:
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1. Renaming the config_install.ini file
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- Once you have extracted the files, open the installation -> extra modules folder on your computer and click on the LSMremote folder inside extra modules. (however as LSMRemote can be integrated in you hosting websites you can go to your preferred web hosting provider)
- (For windows go to OS (C:) -> Program Files (x86) -> AgileBio -> LabCollector -> www -> your online instance name will be seen on the name of the folder (click on that folder) -> extra_modules -> lsmremote -> config.ini
- When you open the LSMremote folder search for the file named config_install.ini and rename it to config.ini (.ini is the initiation/configuration file)
- Once you have extracted the files, open the installation -> extra modules folder on your computer and click on the LSMremote folder inside extra modules. (however as LSMRemote can be integrated in you hosting websites you can go to your preferred web hosting provider)
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2. Updating the wsurl option in config.ini
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- Once you have renamed the config.install.ini file, open the config.ini file (it will open in notepad format).
- You will see many options, edit the option wsurl = http://xxxxxxxxxxxxxxxxxxxxxxxxx/extra_modules/lsm/ws/service.php?wsdl by inserting the name of your online instance.
(however as LSMRemote can be integrated in you hosting websites you can go to your preferred web hosting provider)
- Do Ctrl+S to save the changes made in config.ini file. (*if it asks you for admin permission then you need to have the admin access to save corrections in this file)
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3. Enabling the extension in php.ini file
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- After the second step, you have to make sure that one of the extensions in the PHP folder is enabled in the php.ini file.
*Generally, this extension is enabled, but if it is not enabled, you need to enable it by following the explained process. - You can choose to perform this step by either way by going to the PHP file in LSMRemote installation folder or editing it from LabCollector server Manager.
*Please see our KB on how to activate soap extension.
- After the second step, you have to make sure that one of the extensions in the PHP folder is enabled in the php.ini file.
- Now go to your online instance and click on the LSM add-on. You will see this line in your browser URL. Edit the line and add remote in front of LSM and hit enter.
- Finally, the login page will open like below, where you can register or login to LSMRemote.
*If the login page doesn’t open, please make sure you have the latest PHP version on your LabCollector Server Manager.
*Please read our KB on how to log in and register into LSMremote.
2. Integrate LSMRemote into your website
- As explained in the start, LSM is an add-on for test/service labs.
- here you can perform tests on samples.
- These tests or samples can be given to you by clinic or hospitals or patients directly (Requesters).
- These requesters can use the LSMRemote add-on and integrate it into their website to easily keep track of all the jobs(tests) and get reports, etc.
- To integrate LSMRemote into one’s website you need to insert the LSMremote application in a WordPress page, copy this code in the HTML content:
<script type="text/javascript" src="[path]js/iframeResizer.min.js"></script> <iframe width="100%" src="[URL]" frameborder="0" scrolling="auto" onload="javascript:iFrameResize({heightCalculationMethod: 'taggedElement'});"></iframe>
* IMPORTANT: Replace [path] in the above code by the app URL. (for example, http://www.mydomain.com/lab/extra_modules/lsmremote)
(however as LSMRemote can be integrated in you hosting websites you can go to your preferred web hosting provider)
- For example, we integrated LSMRemote connected to the above mentioned URL in image above section 2 in our WordPress page using HTML & CSS.
*The other HTML/CSS elements that you see are used to style and format the page of our WordPress. It is not necessary to do the same for you. You can adapt as per your requirements.
- When we access the link (permalink in the above image), we see the LSMRemote on our website the below way.
*NOTE: This is just an example, to show you how LSMRemote looks when it is integrated into the website.
3. Activating report access portal
- Once you have integrated the LSMRemote website you can also have a portal, for example, patients to directly access their test report.
- This setting can be configured in the config.ini file and please read our KB on configurable options in config.ini to activate this report access portal. (point 32 in the KB link)
See section one to access the config.ini file.
When you change the values for token access as true or false, you will see the below option.
- This is a convenient option for patients who want to see their report directly, instead of waiting for or visiting the hospital or test lab
- This token is automatically generated when the Job is submitted in LSMRemote, for example you will see it like this.
* Read our KB on how to submit a job and create a Chain of Custody report.
- When you access the report by adding the token number; three things can happen.
1. If your report is ready it will show a pdf button where you can download your result file.
2. if your report is not ready it will show you the respective message.
3. If you have entered a wrong token number then it will show that the token doesn’t exist.
- Let’s say that you want to separate the login pages for the “Direct report access” login option from the “provider portal” on separate webpages.
- LabCollectcor allows you to do so. All you have to do is add either login=1 or login=2 at the end of the URL.
- This way you have a different individual webpage for provider and direct report access login pages.
4. LSMRemote configurable properties
- You can configure LSMRemote as per your requirements.
- For such purposes, LSMRemote offers various options with the help of config.ini file options.
- You can use all the options in the config.ini (explained in section 2 above) to configure your LSMRemote as per your requirements.
- For example, you can configure the LSMRemote to have the “Direct report access” option where the patients can directly add their token number and access their test report.
*Please check our KB to see LSMRemote configurable options.
Related topics:
- Read our KB on how to register/login and see options in LSMRemote.
- Check our KB on LSMremote config.ini.
- Check ou KB on LSMremote configurable options.