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HOW TO START WITH LABCOLLECTOR
- How does LabCollector interface look?
- How does a module generally look like?
- How to set up storage in LabCollector?
- What are fields in LabCollector?
- What are records in LabCollector & how to create them?
- How to start with Antibodies module?
- How to start with Chemical structures module?
- How to start with Document module?
- How to start with Electronic Lab Notebook (ELN)?
- How to start with Equipment module?
- How to start with Plasmids module?
- How to start with Primers module?
- How to start with Reagent & Supplies module?
- How to start with Sample module?
- How to start with Sequences module?
- How to start with Strains & Cells module?
- How to use Webinars add-on?
- How to mass update memorized records?
- How to use LabCollector for COVID-19 testing?
- Show all articles ( 4 ) Collapse Articles
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INSTALLATION
- How can I connect to LabCollector from another computer?
- LabCollector Installation Requirements for AWS
- How to install LabCollector using Docker?
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- How to move a whole installation to a new Windows server?
- How to run LabCollector server on a 64bits Windows machine?
- Install LabCollector with IIS on Windows Server
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- Clean the apache log manually to improve the speed.
- Switching to the ServerManager v2.5 (old way)
- Windows Installation Using Setup Wizard
- How to enable the soap.dll extension in LSMRemote using php file or LabCollector Server Manager (Windows)?
- How to use the LabCollector Server Manager?
- How to replicate LabCollector in real time with Windows Server Manager?
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- Apache Server/Web server doesn't run on Windows 10
- Clean the apache log manually to improve the speed.
- Clean the logs manually to improve the speed.
- ERROR in log: AH00052: child pid 3461 exit signal Segmentation fault (11)
- ERROR: Warning: mysql_connect(): Client does not support authentication protocol requested by server (…)
- How to make Java applets work again after upgrading to Java 7U51+?
- How to restore overwritten documents
- I have the message "Failed to connect to mySQL server. No Database found for this lab account". What can I do?
- My LabCollector or Add-on is very slow. Why and how to fix it?
- Unknown column “auto_name_mode” in “field list”: The error is occurring when I want to adjust existing records, make new records or import data. What can I do?
- URL issue
- When I add records or any values I have this message: "incorrect integer value: for column 'count' at row 1"
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- Give access to LabCollector to collaborators outside your network
- Can the database be separated from the system on which labcollector is installed?
- I have problems installing PHP and/or MySQL. Is there an alternative?
- Mysql Server memory usage optimization
- PHP extensions needed
- Rack scanners installation and connection with ScanServer
- System Requirements - Hosted options (FR/ENG)
- What are PHP and MySQL? Do I need to have PHP & MySQL?
- How to migrate LabCollector to new Linux Server?
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GENERAL
- What is LabCollector?
- How do I install LabCollector? Where can I find the install.exe file?
- System Requirements - Hosted options (FR/ENG)
- How does the remotely hosted version work?
- Can I use LabCollector on a single computer? Can I install it on a web server?
- If I purchase ONE license, do I need to purchase additional licenses for other computers in my lab network?
- Client Area Tutorial
- LabCollector support
- What are the FDA requirements for software to comply with GxP guidelines?
- Do I need to purchase all modules? Can I use only the primers module?
- Icons meaning (EN/FR) V.6.0
- Icons meaning (EN/FR)
- How do I search in LabCollector?
- Can I see/list all records in a module?
- How do I print records?
- How to add panels to LabColletor v6.0?
- How to create tubes with storage and mark their usage? (v6.0)
- How to create and set alerts for tubes? (v6.0)
- Label network printers and roll types
- Show all articles ( 4 ) Collapse Articles
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BASIC FEATURES
- Export and print models
- How do I add multiple records without data import
- How do I link records and for what purpose?
- How do you create or edit records? (FR/EN)
- Icons meaning (EN/FR)
- Icons meaning (EN/FR) V.6.0
- Reagents & Supplies Link what is the purpose?
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- What can I do with the default fields?
- Can I add a custom module to fit my specific needs?
- Custom field types
- How do you create a custom field? (For v5.2 and below)
- How do you create a custom field? For version 5.2 onwards
- Custom field: Field category option version 5.2x
- Custom fields: Tab Analysis option
- How do I customize record options?
- How do I use a Read-only field?
- How to customize LabCollector login page colors?
- How to change the language & name of custom fields?
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- What is a CSV file?
- Import your data (v6.0)
- Import your data (5.3 version and above)
- How to delimit data csv for data import?
- What are the default fields values while importing data? v6.0
- How do I format the date value as yyyy-mm-dd or yy-mm-dd to import?
- Import your samples and associated storage in 3 steps
- Import and manage your Reagent & Supplies V5.3 and above
- Importer ma BDD EndNote dans LabCollector (FR)
- How to solve errors while importing data
- How to mass update memorized records?
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- What are user level permissions?
- How do you use versioning? v5.31 and below
- How do you use versioning? v5.4 and above
- How to manage users (v5.31 and below)
- How to manage users (v5.4 and above)
- How to use AD or LDAP for login authentication?
- What are group policies and how to use them?
- What are group policies and how to use them? v5.4 and above
- What are group policies and how to use them? v6.0 and above
- How to manage users? (v.6.032+)
- How to configure access permissions?
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MODULES
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- Articles coming soon
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- How to start with Reagent & Supplies module?
- Reagent & supplies preferences (v6.03)
- Reagent & supplies preferences
- How do I create alerts for chemical and equipment?
- How do I create alerts with lots? (v6.0)
- Manage your reagent lots (v6.0)
- Manage your reagent lots
- How to dispose of a lot?
- Risk codes
- How do I manage vendors and sellers?
- How do I print risk and safety data information?
- Import and manage your Reagent & Supplies V5.3 and above
- Manage storage for Reagent & Supplies module
- Manage storage for Reagent & Supplies module (v6.0)
- GHS Hazard Pictograms, Mandatory Safety Signs and the NFPA Hazard Rating System
- How to Use SDS Maker?
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- Articles coming soon
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- Articles coming soon
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- How do I create alerts for chemical and equipment?
- How to activate and set different types of Equipment alerts? (v6.0)
- How to activate and set different types of Equipment alerts? (v5.4 and below)
- How to add a new category and record in equipment module? (v6.0)
- How to add a new category and record in equipment module? (v5.4 and below)
- How to add control chart for calibration maintenance of equipment?
- How to Add/Edit Maintenance for Equipment? (v6.0+)
- How to add/edit maintenance for equipment (v5.4 and below)
- How to export equipment maintenance report?
- What are the options in "display maintenance" section of equipment. (v5.4 and below)
- What are the options in "display maintenance" section of equipment. (v6.0)
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- Articles coming soon
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ADD-ONS
- What are Add-ons?
- Fly Stock Manager
- What's Weight Tracker Add-On? How To Use It?
- Custom Field File Upload
- What is e-catalog add-on? And how to use it?
- Lab Cross Search
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- How to start with LSM?
- LSM Usage Guide – From Job Request to Results Reporting
- Test the LSM API
- Insert the LSMremote application in your website
- How to Perform a Paternity/Relationship Genetic Test using LSM?
- Introduction to HL7 and how to use it in LSM
- LSM Job List Icons - What do they mean?
- LSM: How to Group Test Results by Specialty?
- Lot-Sample Linking in LSM for Quality Control
- LSM: Trending and Job Charts
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- 1st step: Create users and requesters
- How to send samples from LabCollector to a LSM job
- How to link a custom module to LSM?
- How to manage case records (patients, animals...) in LSM?
- How to re-order/re-arrange job & sample custom fields in LSM?
- How to manage ranges in LSM?
- How to restart a job in LSM?
- I’m able to add a new job with no problems but when I try to start it I can’t do it. The following error appears: Error loading XML document: data/bl/bl-job.php. What’s the problem?
- How to accept jobs in LSM?
- How to create & execute a job in LSM?
- How to create version of test in LSM?
- How to import CSV with samples and tests in LSM?
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- 5th step: Result and invoice template
- How to generate Reports in LSM?
- How to create a processing report in LSM?
- How to Generate Invoices Report Template in LSM?
- How to create a Chain Of Custody (CoC) report and use it LSM & LSMRemote?
- How to use text editor to create a report template in LSM?
- Report tags in LSM for result/invoice/CoC/batch templates?
- Correction/Amendement actions in LSM report
- How to print and follow multiple reports/CoC's in LSMRemote?
- Error loading big reports in LabCollector
- Error loading big reports in LSM
- How to configure header & footer in LSM report/CoC/invoices? (from v4.057+)
- What's the purpose of the report unique ID barcode?
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- Articles coming soon
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- LSMRemote (v6.0) registration, login and other options
- LSMRemote installation steps & Integration into the website ? (v4.0)
- LSMRemote configurable options (v4.0)
- How to configure new fields, submit a job in LSMRemote & view it in LSM?
- How to search in LSMRemote?
- How to create a token for report access for patient/client using LSMRemote?
- How to generate CoC Manifest with integrated labels?
- How to print and follow multiple reports/CoC's in LSMRemote?
- Patient pre-registration configuration and LSMRemote portal connection
- How to do job pre-registration from the LSMRemote portal?
- How to integrate appointments scheduling in LSMRemote?
- How to enable the soap.dll extension in LSMRemote using php file or LabCollector Server Manager (Windows)?
- How to import jobs using LSMRemote?
- How to configure kit and activate it in LSMRemote?
- How to print in bulk the barcodes using LSMRemote?
- How to enable the soap.dll extension in LSMRemote using php file on Linux?
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- OW-Server ENET manual
- OW-Server Quick start guide
- OW-Server WiFi manual
- Quick WiFi configuration for OW-Server WiFi
- Conversion method from mA reads to specific Unit for data logger probe?
- How to setup your Data Logger in LabCollector?
- How to Install Sensors on ULT Freezers?
- How to Setup Alerts in Data Logger?
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- How to create a Book, add an Experiment and a Page?
- What is inside a Book?
- What is inside an Experiment?
- Whats inside ELN Page?
- How do I print from ELN?
- ELN Workflows
- ELN templates
- TIFF Image usage
- How to electronically sign the ELN pages?
- How to add a microplate in ELN Page?
- How to add a reagents/solutions recipe in ELN?
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- ELN - Zoho Spreadsheet Help Guide
- Graph in Flat spreadsheet
- How to change the language of ZOHO excel in ELN?
- How to replicate/import your excel in ELN?
- How to use spreadsheets?
- What is Flat & Zoho Spreadsheet Editor & how to enable it?
- How to use Flat spreadsheet & formulas in it?
- How to make graph in Flat Spreadsheet?
- What can be copy pasted from excel into Flat spreadsheet?
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- Sample-receiving add-on : Project configuration settings
- How to create & process a package in Sample receiving add-on?
- How to perform pooling in sample receiving add on?
- How to process plates in sample receiving add-on?
- How to view samples created in sample receiving add-on into a module?
- How to add samples created in sample receiving into Workflow add-on?
- How to connect and send samples from 'sample receiving' to do tests in 'LSM'?
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MOBILE APPS
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- Articles coming soon
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INTEGRATION
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API
- Introduction to LabCollector API
- API for LabCollector (v5.4+)
- API for ELN (v1)
- How to test the LabCollector REST API?
- API error messages
- API: How to create boxes or plates?
- Test the Lab Service Manager API
- Webservice/API Apache setup
- How to set up your Web Services API?
- What's Swagger UI? How to access it & test out API endpoints?
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TOOLS
- How do you install NCBI blast executable to use in LabCollector?
- How to setup and use Recipe Manager (old version)
- How to manage memorized items?
- Purchase order management - A to Z
- Purchase order management – A to Z (v 6.0+)
- Recipe Manager (v6.0)
- Samples batch tool (Rack scanner)
- How to use Mass Record Updater?
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UTILITIES / MIDDLEWARE
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- How to download and Install File connector v2.2? (Labcollector v6.0 )
- How to install Fileconnector in Mac OS? (Labcollector v6.0 )
- Editing a file using File Connector
- How to use a specific software to open certain types of files in fileconnector? (Labcollector v6.0 )
- How to use Fileconnector in Mac OS?
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- How to setup and configure Scan Server with LabCollector?
- Samples batch tool (Rack scanner)
- The rack barcode on top or as third element in lines?
- How to open CSV in UTF8 in Excel?
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PRINTING
- How to configure printer with LabCollector?
- How to connect USB printer to LabCollector?
- Direct Printing Compatibility (All Printers Support Generic PDF Label Printing)
- Label network printers and roll types
- Barcode label generation and printing
- How do I print barcode labels?
- How do I print box maps?
- How do I print records?
- How do I print risk and safety data information?
- How do I print storage records
- How to print labels on HTTPS environment?
- How to best configure your PDA N5000 for LabCollector use
- How can I configure my barcode scanner AGB-SC1 CCD?
- How can I configure my barcode scanner HR200C ?
- How do I configure FluidX to support ScanServer?
- Barcode Printer Connection Time Out
- AGB-W8X Manual for barcode scanning
- How to set up your Printers & Labels?
- How to Increase Label Print Quality in LabCollector?
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STORAGE
- How to set up storage in LabCollector?
- How to create boxes/drawers/racks in storage equipment?
- How to create box models for storage?
- How to replicate and duplicate boxes in storage?
- How to store and manage straws? (EN/FR)
- How Do I Add Samples to a Specific Freezer, Shelf or Other Part of the Storage System?
- How do I get out samples from a specific freezer?
- Manage storage for Reagent & Supplies module
- How to organize Storage Browser?
- How do I print box maps?
- How do I print storage records
- Storage Check-in/out System
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COMPLIANCY
- What is in the Compliancy Pack?
- How do I use a Read-only field?
- What are the FDA requirements for software to comply with GxP guidelines?
- FDA CFR21 part 11 product checklist
- ISO 17025 compliancy requirements
- How do you use versioning? v5.31 and below
- How do you use versioning? v5.4 and above
- Should I lock, archive or delete records?
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SUPPORT
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SETTINGS
- How to configure Apache to work with Office 2007 and higher?
- How to speed up your LabCollector? (EN/FR)
- PHP extensions needed
- Speed your local network
- TIFF Image usage
- Time stamp in the records showing incorrect time.
- How to configure SMTP to use OAuth 2.0 (Microsoft & Gmail)?
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- LabCollector General setup
- LabCollector General setup - v5.4
- LabCollector General Setup 5.2
- LabCollector General setup-v6.0
- Login Options & php requirements for LDAP/SSO
- How to set up your LabCollector's general settings, logo & modules' names?
- How to configure your Proxy, Task Scheduler and Email options?
- How to configure your module search & form options?
- How to configure your Homepage external links?
- How to set up your News Feed?
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- Error loading big reports in LabCollector
- Fields with scroll bar don't work with Safari, what can I do?
- I can't manage to view box scheme in Safari, why?
- I get the error: "The program can't start because MSVCR110.dll is missing from your computer. Try reinstalling the program to fix this problem" when installing or updating LabCollector for Windows
- Issue in upload file: look at your PHP configuration
- Module search fails with 404 error or request too long
- When I want to import large files, nothing happens?
- Why do I have the error “MySQL server has gone away” on file upload?
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NEW KB OF THE MONTH
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RECORDED PRESENTATIONS
Fly Stock Manager
SUMMARY:
LabCollector has released a new add-on called “Fly Stock Manager“: a management system for the storage, rearing, and transfer of flies to a new nutrient medium. The storage by plates/tubes is easily visualized in order to allow you to efficiently manage the change of medium or the destruction of the tubes. The fly storage is thus kept up to date and alerts can be created to notify you of the need to take action on any element of the storage. A barcode printing option is also available to facilitate the management of plates and fly tubes.
Follow the below steps to understand & perform fly management with the Fly Stock Manager add-on:
1. Installation
2. Configuration
3. How to use it
1. Installation
- In your client area, download the pack for the add-on Fly Stock Manager.
- As super-administrator, go to ADMIN > Other > Setup > Upload Add-ons, then upload the zip.
- Return on the homepage and enter in your new add-on
2. Configuration
A small setup is needed to use all the functionalities of this add-on. The logic of this add-on is to create one record per tube of flies. The record will contain all the data relative to the flies in the tube.
Under the menu Setup on the top right of the add-on homepage, select the module where all the fly stock records will be created with their storage. You can create a custom module to fit your needs.
Once the module is selected, if the needed parameters are not met, the software will alert you with:
Indeed, to be able to follow the flips that you need to perform, you need to create at least one custom field date or datetime named next_flip_date. To do that, follow the link of the green button +Add custom field. Please refer to this KB if you need more info.
Once this configuration is done, you will be able to select the information you want to see in the tooltip when you fly over the tubes in the box. Just check the box corresponding to the field value you want to see and save.
3. How to use it
All the general and storage data relative to your fly will be available in the module of your choice selected in section 2.
Now, to use this add-on just follow the steps on the left one by one.
Step 1: Find box/tube
You have different ways to find the right tube(s) on which you want to work.
- You can search a box based on its name typing some characters of the box name and then selecting your box
- You can scan the internal box barcode (e.g. xx/BX) to directly find the box
- you can scan directly the tube barcode that corresponds to the unique barcode of the record.
Step 2: Select tube(s)
If you, first, search for a box, you will have then to select the tube(s) you need:
- To select a tube just click on the position you want, the tube becomes green and reveals the next step.
- If you want to select different tubes at different locations in the box, maintain the CTRL keyboard and click on all the tubes you want to select.
- If all the tubes you want are on the same row(s) or column(s), you can select all, dragging your mouse all over the row/column like below.
- You can also scan all the tubes one by one like in step 1.
Step 3: Select action
Four different actions are possible. Once the action is selected, a confirmation is needed to continue.
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Action 1: FLIP
When you want to do a flip action, step 4 will allow you to select the position of the flipped tube. The selected tube at step 3 turns blue and you need to select the new position in the same box. If you flip multiple tubes, you need to select the same number of new positions.
Once the new position is selected, the next step 5 is to select a new flip date. By default, the next flip date is based on 20 days, but you can select one of the other values. So automatically, the field created in section 2 will be automatically populated based on the date of the action and the selected value.
In the record module, the result of a flip will be as follow:
1. The parent fly stored in A1 (see above) was created manually in the module with some information like its genotype.
2. The flipped fly is stored in the position selected above, B1, in the same box, with the same storage information (e.g. volume).
3. The next flip date is automatically calculated, here 20 days after the creation/today date.
4. Some information from the parent fly is automatically populated: the genotype is repeated and a link to the parent ID is created.
5. A normal link is also automatically done between both records.
As Super-administrator, under ADMIN > Other > record options, the name can be based on an automatic prefix, here FS, followed by the unique ID with autofill based on 8 digits. Like that, the add-on will create the new flies with an automatic name.
You can also create a text field for genotype and an autocomplete field for the Parent ID, that will be auto-populated in case of a flip.
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Action 2: FLIP & TRASH
When you want to do a flip & trash action, you will not have to perform the step 4. The flipped tube will automatically be placed in the same position as the parent-trashed tube.
Automatically, you are forwarded to step 5 to select a new flip date like above. You can note that the position from is equal to the position to.
The result of this action on the records will be twofold. For the parent fly, archiving of the relative record is done after the tube deletion. The record can be found if you select under the Status filter the value Archived (vs. Active). For any reason, if you want to recover the record, you can unarchive it.
For the flipped tube, you have a new record with the same position as the parent record and the same information as seen in the Flip action.
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Action 3: TRASH
The simplest action. As above, the tube is deleted and the record is archived.
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Action 4: GIVE
When you select the action Give, the steps 4 and 5 will allow you to select the new owner and the action you want to perform on this tube in addition to giving it. During these actions, all the data of the record will be duplicated in the new records created. So if there is no flip date assigned, the new record will not have one either.
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- Action 4.1: Give this tube
You do nothing but give your tube to a new owner. Each record in LabCollector has an owner. Here you change the owner from you (Jane Doe) to one of your colleagues (John Pierce) that you need to select in the list:
Since you can have different racks and locations in your stock room, you will have to define a new storage location for the tube given:
Either you give your fly tube without defined storage in the system. It will be the new owner that will do this action himself on his new record. Or you give the fly with a new location selecting a common box (accessible to everybody in the virtual lab) or you create a new common box that you put in the equipment of your choice.
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- Action 4.2: Flip and give this tube
Here, you first do the Flip action then you give the parent tube. Since the Flip action is done, a new record will be created with you as owner and the tube will be stored at the original position.
You then have to choose where you want to store the parent tube you give, as above.
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- Action 4.3: Flip and give the flipped tube
Again, the first action is to flip the tube but this time you give the flipped tube. A new record will be created with your colleague as owner and you need to select a new location for the flipped tube.
Step 6: Print labels
At the end of each of these actions, the add-on will allow you to print the barcode relative to the new tube(s) created.
Automatically, you will be forwarded to the barcode label series form to print the barcode you need. At least you need to have a label type configured. For example below:
1. The Fly stock add-on send automatically the right record to print (no action here).
2. Select the label type (if you don’t have a default one) then the label template if you want.
3. You can select what you want to print on the label based on the template selected or your choice at this moment (field, size, color…).
4. Send the order to create the PDF and print the label